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Table 2 Ontologies and ontology versions used for evaluation

From: Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Ontology

Version

Date of oldest term in test set

Terms Tested

Tasks Performed and Evaluated

CL

2023–07-20/cl.owl

2023–01-10

50

all

ENVO

2023–02-13/envo.owl

2021–05-14

50

all

FOODON

2023–05-03/foodon.owl

2023–01-01

50

all

GO

2023–07-27/extensions/go-plus.owl

2023–01-03

50

all

HP

2023–07-21/hp.owl

2023–01-16

50

relationships, definitions

MONDO

2023–08-02/mondo.owl

2023–04-01

50

all

MP

2023–08-09/mo.owl

2023–02-08

50

relationships, definitions

OBA

2023–08-24/oba.owl

2022–11-26

50

all

OBI

2023–07-25/obi.owl

2022–12-14

50

relationships

UBERON

2023–07-25/uberon.owl

2023–01-18

40

all

  1. For each ontology we used the standard release product, except for GO, where we used the go-plus version, which has additional relationships to other ontologies. We took the most recent available version of each ontology, and separated the most recent terms into a test set. The minimum (oldest) date of each term is shown