Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features

Table 1 Databases and datasets added to TogoID since the previous publication

Database	Dataset ID	Dataset full name	Category
Assembly	assembly_insdc	Assembly INSDC	Genome
Assembly	assembly_refseq	Assembly RefSeq	Genome
ATC classification	atc	ATC classification	Drug
BioProject	bioproject_umbrella	BioProject umbrella	Project
Cellosaurus	cellosaurus	Cellosaurus	CellLine
FlyBase	flybase_gene	FlyBase gene	Gene
GEA	gea	GEA	Experiment
GEO	geo_sample	GEO sample	Sample
GEO	geo_series	GEO series	Project
GlycoMotif	glycomotif	GlycoMotif	Glycan
COG	cog	COG	Ortholog
Human Phenotype Ontology	hp_inheritance	HP Inheritance	Classification
INSDC	insdc_master	INSDC master	Project
JGA	jga_dataset	JGA Dataset	Project
JGA	jga_study	JGA Study	Project
IUPHAR	iuphar_ligand	IUPHAR ligand	Compound
LIPID	lipidmaps	LIPID MAPS	Lipid
MGI	mgi_allele	MGI allele	Variant
MGI	mgi_genotype	MGI genotype	Genotype
Mammalian Phenotype Ontology	mp	Mammalian Phenotype Ontology	Phenotype
NBDC Human Database	nbdc_human_db	NBDC Human Database	Project
NCIt	ncit_disease	NCIt disease	Phenotype
NCIt	ncit_tissue	NCIt tissue	Anatomy
Orphanet	orphanet_gene	Orphanet gene	Gene
Pathbank	pathbank	Pathbank	Pathway
PDB	pdb_ccd	PDB CCD	Compound
PMC	pmc	PMC	Literature
PROSITE	prosite	PROSITE	Domain
PROSITE	prosite_prorule	PROSITE ProRule	Annotation rule
PubChem	pubchem_pathway	PubChem pathway	Pathway
SGD	sgd	SGD	Gene
SMART	smart	SMART	Domain
SwissLipids	swisslipids	SwissLipids	Lipid
TAIR	tair	TAIR	Gene
UBERON	uberon	UBERON	Anatomy
UniProt	uniprot_proteome	UniProt proteome	Proteome
VGNC	vgnc	VGNC	Gene
WormBase	wormbase_gene	WormBase gene	Gene
Xenbase	xenbase_gene	Xenbase gene	Gene
ZFIN	zfin_gene	ZFIN gene	Gene

ISSN: 2041-1480