Fig. 10

An example for a pairwise relationship limitation type “Lack of context for a general concept”. Top left (a): Each of three major sites (\(\beta\)-helix of PHFs, \(\beta\)-helix of SFs, and C-shaped cavity of SFs) is connected to a general concept binding sites with an is_a relation. binding sites is an object determined by a tool electron cryo-microscopy. Bottom (b): A complex graph that removes a limitation of “Lack of context for a general concept”. A general concept binding sites and its contexts for three major sites are reified as an entity